Variant report

Variant	rs11218198
Chromosome Location	chr11:121064444-121064445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BLID-12	chr11:121064281-121064637	NONHSAT024738

Extended variants
information (count: 60 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10892687	0.98[ASN][1000 genomes]
rs11218155	0.85[JPT][hapmap]
rs11218169	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218175	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11218176	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11218191	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11524440	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12361100	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12575628	0.91[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1310521	0.87[ASN][1000 genomes]
rs1310528	0.88[ASN][1000 genomes]
rs17124937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17124940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17124945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155364	0.91[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2155365	0.85[JPT][hapmap]
rs2155369	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs22298	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs4554895	0.92[GIH][hapmap];0.85[JPT][hapmap]
rs481703	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs492047	0.98[ASN][1000 genomes]
rs492294	0.85[JPT][hapmap]
rs4935763	0.99[ASN][1000 genomes]
rs4936580	0.85[JPT][hapmap]
rs4936593	0.99[ASN][1000 genomes]
rs510722	0.91[ASN][1000 genomes]
rs527258	0.82[ASN][1000 genomes]
rs543119	0.85[JPT][hapmap]
rs546916	0.82[ASN][1000 genomes]
rs552580	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs560365	0.85[JPT][hapmap]
rs560401	0.85[JPT][hapmap]
rs561195	0.85[JPT][hapmap]
rs562281	0.91[ASN][1000 genomes]
rs576271	0.88[ASN][1000 genomes]
rs582876	0.87[ASN][1000 genomes]
rs584355	0.88[ASN][1000 genomes]
rs588917	0.85[JPT][hapmap]
rs589790	0.83[EUR][1000 genomes]
rs592160	0.91[ASN][1000 genomes]
rs594951	0.85[JPT][hapmap]
rs596882	0.85[JPT][hapmap]
rs599894	0.90[JPT][hapmap]
rs60016568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs601102	0.98[ASN][1000 genomes]
rs605379	0.85[JPT][hapmap]
rs618523	0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs620896	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs631969	0.99[ASN][1000 genomes]
rs633012	0.88[ASN][1000 genomes]
rs640332	0.92[ASN][1000 genomes]
rs662496	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs663031	0.88[ASN][1000 genomes]
rs663435	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs677336	0.87[ASN][1000 genomes]
rs677775	0.87[ASN][1000 genomes]
rs679607	0.88[ASN][1000 genomes]
rs686882	0.90[JPT][hapmap]
rs688641	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7105435	0.88[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11218198	SIDT2	cis	cerebellum	SCAN
rs11218198	TBCEL	cis	cerebellum	SCAN
rs11218198	FXYD6	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121052800-121065600	Weak transcription	Gastric	stomach
2	chr11:121053800-121065600	Weak transcription	Pancreas	Pancrea
3	chr11:121055400-121065600	Weak transcription	Ovary	ovary
4	chr11:121055600-121065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:121056800-121065400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:121056800-121065600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:121058000-121065400	Weak transcription	Fetal Lung	lung
8	chr11:121058800-121069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:121062600-121065600	Weak transcription	HSMMtube	muscle
10	chr11:121062600-121070000	Weak transcription	Fetal Heart	heart
11	chr11:121063000-121065600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:121063200-121065400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:121064200-121064600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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