Variant report

Variant	rs640953
Chromosome Location	chr11:56299167-56299168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10896484	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10896486	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10896488	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10896494	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10896495	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11228647	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11228675	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11228685	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11228697	1.00[JPT][hapmap]
rs11228717	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12225008	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12365813	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12786642	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1397054	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1510004	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4938829	0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4938835	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4939054	0.80[ASN][1000 genomes]
rs594113	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs594568	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs610822	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs611459	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs612885	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs615231	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs621826	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs624412	0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs637202	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs638801	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs647027	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs647058	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs660788	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs663964	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs672711	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs675991	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56298400-56299400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:56298400-56302000	Enhancers	Fetal Intestine Large	intestine

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