Variant report

Variant	rs6431239
Chromosome Location	chr2:234080939-234080940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10754947	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12694926	0.82[AMR][1000 genomes]
rs12694928	0.84[AMR][1000 genomes]
rs13388142	0.82[AMR][1000 genomes]
rs28429042	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28459768	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28478933	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28534487	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28539971	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28576692	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28605534	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28609111	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28615641	1.00[ASN][1000 genomes]
rs28631646	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28655385	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28669088	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35349669	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35877172	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4585024	1.00[ASN][1000 genomes]
rs55801407	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62192874	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6431237	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715767	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737719	1.00[ASN][1000 genomes]
rs67498812	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7558417	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559212	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7568027	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7568389	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570320	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577360	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581787	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7597516	0.84[AMR][1000 genomes]
rs7597763	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7607736	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7607812	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234052600-234088400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:234053800-234086000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:234053800-234087800	Strong transcription	Fetal Thymus	thymus
4	chr2:234053800-234093200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr2:234053800-234110800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:234053800-234113800	Strong transcription	Primary T cells from cord blood	blood
7	chr2:234053800-234118000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr2:234054400-234110600	Weak transcription	Small Intestine	intestine
9	chr2:234055200-234113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:234058600-234105400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:234060000-234087800	Weak transcription	NHEK	skin
12	chr2:234061600-234094600	Weak transcription	Brain Anterior Caudate	brain
13	chr2:234061800-234087600	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:234062000-234108400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:234062600-234084600	Strong transcription	GM12878-XiMat	blood
16	chr2:234069800-234083400	Strong transcription	Thymus	Thymus
17	chr2:234074200-234111200	Weak transcription	Brain Substantia Nigra	brain
18	chr2:234074600-234122000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:234074800-234101000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr2:234075000-234100000	Weak transcription	HUVEC	blood vessel
21	chr2:234075200-234082600	Weak transcription	Fetal Heart	heart
22	chr2:234075200-234087400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:234075200-234094200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:234075200-234111800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:234075200-234117000	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr2:234075400-234083000	Strong transcription	HMEC	breast
27	chr2:234075400-234087400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:234075400-234087400	Strong transcription	Spleen	Spleen
29	chr2:234075400-234087400	Weak transcription	K562	blood
30	chr2:234075400-234088000	Strong transcription	Primary B cells from cord blood	blood
31	chr2:234075400-234111200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr2:234075400-234113800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr2:234075400-234115200	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr2:234076000-234088000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr2:234076400-234087600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr2:234076400-234088000	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr2:234076800-234081400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:234076800-234083200	Strong transcription	Dnd41	blood
39	chr2:234077000-234081200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr2:234077000-234081200	Strong transcription	Liver	Liver
41	chr2:234077000-234081200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr2:234077000-234081400	Strong transcription	Placenta	Placenta
43	chr2:234077000-234081600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
44	chr2:234077000-234083200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr2:234077000-234086000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr2:234077000-234086400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr2:234077200-234081800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr2:234077200-234117200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:234077400-234083000	Strong transcription	HepG2	liver
50	chr2:234077400-234087400	Weak transcription	Pancreas	Pancrea

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