Variant report

Variant	rs6737719
Chromosome Location	chr2:234086724-234086725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234086502..234088128-chr2:234098877..234100462,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10754947	1.00[ASN][1000 genomes]
rs10929072	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28429042	0.83[ASN][1000 genomes]
rs28459768	0.83[ASN][1000 genomes]
rs28478933	0.83[ASN][1000 genomes]
rs28534487	0.83[ASN][1000 genomes]
rs28539971	0.83[ASN][1000 genomes]
rs28576692	0.83[ASN][1000 genomes]
rs28605534	0.83[ASN][1000 genomes]
rs28609111	0.83[ASN][1000 genomes]
rs28615641	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28631646	0.83[ASN][1000 genomes]
rs28655385	0.83[ASN][1000 genomes]
rs28669088	0.83[ASN][1000 genomes]
rs35349669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs35877172	0.83[ASN][1000 genomes]
rs4571051	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4585024	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55801407	0.83[ASN][1000 genomes]
rs62192874	0.83[ASN][1000 genomes]
rs6431237	1.00[ASN][1000 genomes]
rs6431239	1.00[ASN][1000 genomes]
rs6715767	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67498812	0.83[ASN][1000 genomes]
rs7558417	1.00[ASN][1000 genomes]
rs7559212	0.83[ASN][1000 genomes]
rs7568027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7568389	1.00[ASN][1000 genomes]
rs7570320	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7577360	1.00[ASN][1000 genomes]
rs7581787	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7597763	1.00[ASN][1000 genomes]
rs7607736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7607812	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3361119	chr2:234082991-234087011	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234052600-234088400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:234053800-234087800	Strong transcription	Fetal Thymus	thymus
3	chr2:234053800-234093200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr2:234053800-234110800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:234053800-234113800	Strong transcription	Primary T cells from cord blood	blood
6	chr2:234053800-234118000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr2:234054400-234110600	Weak transcription	Small Intestine	intestine
8	chr2:234055200-234113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:234058600-234105400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:234060000-234087800	Weak transcription	NHEK	skin
11	chr2:234061600-234094600	Weak transcription	Brain Anterior Caudate	brain
12	chr2:234061800-234087600	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:234062000-234108400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:234074200-234111200	Weak transcription	Brain Substantia Nigra	brain
15	chr2:234074600-234122000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr2:234074800-234101000	Strong transcription	Primary hematopoietic stem cells	blood
17	chr2:234075000-234100000	Weak transcription	HUVEC	blood vessel
18	chr2:234075200-234087400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:234075200-234094200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:234075200-234111800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr2:234075200-234117000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr2:234075400-234087400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:234075400-234087400	Strong transcription	Spleen	Spleen
24	chr2:234075400-234087400	Weak transcription	K562	blood
25	chr2:234075400-234088000	Strong transcription	Primary B cells from cord blood	blood
26	chr2:234075400-234111200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:234075400-234113800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:234075400-234115200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr2:234076000-234088000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr2:234076400-234087600	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:234076400-234088000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr2:234077200-234117200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:234077400-234087400	Weak transcription	Pancreas	Pancrea
34	chr2:234077800-234106400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr2:234078000-234088400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:234078200-234087800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr2:234078200-234088800	Weak transcription	Fetal Muscle Leg	muscle
38	chr2:234078200-234110000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr2:234078400-234087800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr2:234078400-234088400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr2:234078600-234087800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr2:234078800-234087600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr2:234078800-234098600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr2:234079200-234087600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:234079200-234087600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr2:234079200-234087600	Weak transcription	Fetal Stomach	stomach
47	chr2:234079200-234088400	Weak transcription	Fetal Intestine Small	intestine
48	chr2:234079200-234091200	Weak transcription	Gastric	stomach
49	chr2:234079200-234094400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr2:234079200-234095600	Weak transcription	Right Ventricle	heart

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