Variant report

Variant	rs6432976
Chromosome Location	chr2:167988499-167988500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10497314	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11899616	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11899748	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11900038	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13339777	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1346723	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2390513	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56836723	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59632215	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59877654	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6432973	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6432975	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6432977	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6706173	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6743737	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7557440	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7588368	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167983400-167989000	Weak transcription	Pancreas	Pancrea
2	chr2:167984200-167988600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:167984600-167989800	Weak transcription	Fetal Thymus	thymus
4	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:167986800-167989000	Weak transcription	Psoas Muscle	Psoas
7	chr2:167987200-167989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:167988400-167988600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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