Variant report

Variant	rs7557440
Chromosome Location	chr2:167962241-167962242
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10497314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10497315	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11694517	0.93[CEU][hapmap]
rs11899616	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11899748	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs11900038	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12105903	0.85[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12619579	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12692857	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs13339777	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1346723	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1367082	0.89[JPT][hapmap]
rs1429930	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16852941	0.93[CEU][hapmap]
rs2390513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56836723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59272620	0.82[AMR][1000 genomes]
rs59632215	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59877654	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61084716	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6432973	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6432974	0.85[CEU][hapmap];0.92[YRI][hapmap]
rs6432975	0.87[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs6432976	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6432977	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6706173	0.82[AMR][1000 genomes]
rs6733384	0.93[CEU][hapmap];0.80[JPT][hapmap]
rs6742332	0.88[CEU][hapmap]
rs6743737	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68091366	0.82[EUR][1000 genomes]
rs7572454	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7580360	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7586785	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs7588368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7606905	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7607028	0.93[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9967718	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3416510	chr2:167961206-167965504	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3417741	chr2:167961656-167965354	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167960600-167966200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links