Variant report

Variant	rs6432974
Chromosome Location	chr2:167982976-167982977
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10497314	0.85[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10497315	0.85[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11899616	0.81[EUR][1000 genomes]
rs11899748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900038	0.81[EUR][1000 genomes]
rs12105903	0.89[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12619579	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12692857	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.88[LWK][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap]
rs13339777	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1346722	0.95[GIH][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs1346723	0.89[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];0.93[YRI][hapmap]
rs1429930	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56730065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59272620	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59632215	0.83[AMR][1000 genomes]
rs61084716	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6432973	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6432975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432977	1.00[CEU][hapmap]
rs6706173	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67074513	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6720763	0.84[CHD][hapmap]
rs6742332	0.83[AMR][1000 genomes]
rs6743737	0.83[EUR][1000 genomes]
rs7556854	0.84[CEU][hapmap]
rs7557440	0.85[CEU][hapmap];0.92[YRI][hapmap]
rs7572454	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7580360	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7586785	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs7606905	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7607028	1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9967718	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs998899	0.89[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167980200-167983600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167980400-167983600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:167980600-167984200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:167982400-167983400	Enhancers	Pancreas	Pancrea
5	chr2:167982600-167983000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:167982800-167983800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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