Variant report

Variant	rs1346722
Chromosome Location	chr2:167965317-167965318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10451542	0.82[CEU][hapmap]
rs10497315	0.95[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1155284	0.94[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.81[LWK][hapmap];0.83[TSI][hapmap];0.88[YRI][hapmap]
rs11694517	0.82[ASW][hapmap];0.82[CEU][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.87[YRI][hapmap]
rs11888230	0.84[CEU][hapmap]
rs11899748	0.83[AMR][1000 genomes]
rs11902653	0.82[CEU][hapmap]
rs12105903	0.83[ASW][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12619579	0.95[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12692857	0.95[JPT][hapmap];0.94[MEX][hapmap]
rs1346723	0.83[ASW][hapmap];0.95[GIH][hapmap]
rs1429930	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1479592	0.88[CEU][hapmap];0.84[YRI][hapmap]
rs16852941	0.82[CEU][hapmap];0.94[MEX][hapmap];0.82[YRI][hapmap]
rs16853050	0.87[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap]
rs16853057	0.82[CEU][hapmap]
rs16853217	0.83[TSI][hapmap]
rs4533448	0.82[CEU][hapmap]
rs56730065	0.82[AMR][1000 genomes]
rs59272620	0.85[ASN][1000 genomes]
rs61084716	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6432974	0.95[GIH][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs6432975	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs6432979	0.81[EUR][1000 genomes]
rs6432984	0.94[ASW][hapmap]
rs6706173	0.83[AMR][1000 genomes]
rs67074513	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6711844	0.82[CEU][hapmap]
rs6720352	0.88[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs6720763	0.82[CEU][hapmap];0.91[CHB][hapmap]
rs6733384	0.82[CEU][hapmap];0.86[LWK][hapmap];0.88[YRI][hapmap]
rs6742332	0.82[CEU][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7569147	0.80[CEU][hapmap]
rs7572454	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7580360	0.98[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7586785	0.95[JPT][hapmap];0.82[YRI][hapmap]
rs7592671	0.84[JPT][hapmap];0.83[YRI][hapmap]
rs7599374	0.80[JPT][hapmap];0.88[YRI][hapmap]
rs7606905	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7607028	0.98[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs988445	0.82[CEU][hapmap]
rs9967718	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs998899	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3416510	chr2:167961206-167965504	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3417741	chr2:167961656-167965354	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167960600-167966200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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