Variant report

Variant	rs7599374
Chromosome Location	chr2:167925954-167925955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10497307	0.87[CEU][hapmap]
rs11694517	0.85[JPT][hapmap]
rs1346722	0.80[JPT][hapmap];0.88[YRI][hapmap]
rs1367082	0.82[CEU][hapmap]
rs16852935	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs6432984	0.85[YRI][hapmap]
rs67074513	0.81[AFR][1000 genomes]
rs6742332	0.87[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7592671	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs998899	0.88[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167925400-167927400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:167925800-167927400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:167925800-167928200	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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