Variant report

Variant	rs7592671
Chromosome Location	chr2:167924590-167924591
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10497307	0.82[CEU][hapmap]
rs11694517	0.89[ASW][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap]
rs1346722	0.84[JPT][hapmap];0.83[YRI][hapmap]
rs1367082	0.82[CEU][hapmap];0.91[GIH][hapmap]
rs16852935	0.84[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.84[TSI][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs6733384	0.89[ASW][hapmap];0.87[YRI][hapmap]
rs6742332	0.90[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7580360	0.83[ASW][hapmap]
rs7599374	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7607028	0.82[ASW][hapmap]
rs998899	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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