Variant report

Variant	rs11694517
Chromosome Location	chr2:167945041-167945042
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10497314	0.93[CEU][hapmap]
rs10497315	0.93[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes]
rs1155284	0.85[LWK][hapmap]
rs11899748	0.87[AMR][1000 genomes]
rs12105903	0.89[ASW][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes]
rs12619579	0.93[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes]
rs12692857	0.83[ASW][hapmap];0.93[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[YRI][hapmap]
rs1346722	0.82[ASW][hapmap];0.82[CEU][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1346723	0.89[ASW][hapmap];0.93[CEU][hapmap]
rs1429930	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16852941	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56730065	0.86[AMR][1000 genomes]
rs59272620	0.81[AMR][1000 genomes]
rs61084716	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6432974	0.86[AMR][1000 genomes]
rs6432975	0.87[AMR][1000 genomes]
rs6706173	0.87[AMR][1000 genomes]
rs67074513	0.84[AFR][1000 genomes]
rs6733384	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap]
rs6742332	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7557440	0.93[CEU][hapmap]
rs7572454	0.89[AMR][1000 genomes]
rs7580360	0.94[ASW][hapmap];0.93[CEU][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7586785	0.93[CEU][hapmap];0.81[JPT][hapmap]
rs7592671	0.89[ASW][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap]
rs7599374	0.85[JPT][hapmap];0.81[AFR][1000 genomes]
rs7606905	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7607028	0.94[ASW][hapmap];0.86[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs891384	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9967718	0.90[AMR][1000 genomes]
rs998899	0.82[ASW][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11694517	SNX19	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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