Variant report

Variant	rs11899748
Chromosome Location	chr2:167984952-167984953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1004767	0.85[CEU][hapmap]
rs10497311	0.85[CEU][hapmap]
rs10497314	0.89[CEU][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10497315	0.89[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1155283	0.85[CEU][hapmap]
rs11899616	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11900038	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12105903	1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12619579	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12692857	0.86[CEU][hapmap];0.94[CHB][hapmap]
rs13339777	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1346722	0.83[AMR][1000 genomes]
rs1346723	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs1429930	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16852941	0.81[AMR][1000 genomes]
rs16853024	0.85[CEU][hapmap]
rs16853103	0.85[CEU][hapmap]
rs16853180	0.85[CEU][hapmap]
rs16853181	0.85[CEU][hapmap]
rs16853201	0.85[CEU][hapmap]
rs17551389	0.85[CEU][hapmap]
rs2390513	0.82[AMR][1000 genomes]
rs2390548	0.85[CEU][hapmap]
rs56730065	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56836723	0.82[AMR][1000 genomes]
rs59272620	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59632215	0.82[AMR][1000 genomes]
rs59877654	0.82[AMR][1000 genomes]
rs61084716	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6432973	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6432974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432976	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6432977	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6706173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67074513	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6742332	0.84[AMR][1000 genomes]
rs6743737	0.81[EUR][1000 genomes]
rs7556854	0.86[CEU][hapmap]
rs7557440	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs7572454	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7580360	0.86[CEU][hapmap];0.94[CHB][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7586178	0.85[CEU][hapmap]
rs7586785	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7588368	0.82[AMR][1000 genomes]
rs7606905	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7607028	1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs891384	0.81[AMR][1000 genomes]
rs9967718	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs998899	0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3431928	chr2:167984660-167985126	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167983000-167988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:167983400-167989000	Weak transcription	Pancreas	Pancrea
3	chr2:167983600-167985400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:167984200-167985400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:167984200-167988600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:167984600-167989800	Weak transcription	Fetal Thymus	thymus

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