Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10451542	0.95[GIH][hapmap];0.83[YRI][hapmap]
rs11888230	0.83[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11893377	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893404	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11893509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899748	0.86[CEU][hapmap]
rs11902653	0.92[CHD][hapmap];0.95[GIH][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16853057	0.95[GIH][hapmap];0.83[YRI][hapmap]
rs4533448	0.95[GIH][hapmap]
rs55733637	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58616240	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6432974	0.84[CEU][hapmap]
rs6432975	0.84[CEU][hapmap]
rs6432977	0.84[CEU][hapmap]
rs6711844	0.83[YRI][hapmap]
rs6720763	0.81[GIH][hapmap]
rs67386767	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67726376	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73017939	0.86[ASN][1000 genomes]
rs7569147	0.82[CHD][hapmap];0.81[GIH][hapmap]
rs988445	0.95[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168016200-168034200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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