Variant report

Variant	rs6711844
Chromosome Location	chr2:168006150-168006151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10451542	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1155284	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1155285	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11888230	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11893404	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11902653	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs1346722	0.82[CEU][hapmap]
rs1479592	0.94[CEU][hapmap];0.96[CHB][hapmap];0.83[EUR][1000 genomes]
rs16853050	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16853057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16853217	0.90[JPT][hapmap]
rs4000962	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4533448	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes]
rs55733637	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs58616240	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59504679	0.84[EUR][1000 genomes]
rs6432979	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66701411	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67074513	0.84[EUR][1000 genomes]
rs6720352	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6720763	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs67386767	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs67485531	0.85[EUR][1000 genomes]
rs67726376	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs68108130	0.84[EUR][1000 genomes]
rs73017939	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7556854	0.83[YRI][hapmap]
rs7569147	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7575729	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7597463	0.90[JPT][hapmap]
rs988445	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs998899	0.93[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
2	chr2:168001000-168008600	Weak transcription	NHLF	lung
3	chr2:168005400-168006200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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