Variant report

Variant	rs16853050
Chromosome Location	chr2:168005312-168005313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:167996633..167999387-chr2:168002848..168005501,2	K562	blood:

Variant related genes	Relation type
ENSG00000254552	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10451542	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1155284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1155285	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11888230	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs11893404	0.86[EUR][1000 genomes]
rs11902653	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs1346722	0.87[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap]
rs1479592	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16853057	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16853217	0.87[CEU][hapmap]
rs4000962	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4533448	0.93[CEU][hapmap]
rs55733637	0.86[EUR][1000 genomes]
rs58616240	0.85[EUR][1000 genomes]
rs6432979	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6432984	0.83[YRI][hapmap]
rs66701411	0.87[EUR][1000 genomes]
rs67074513	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6711844	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6720352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6720763	0.93[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs67386767	0.86[EUR][1000 genomes]
rs67726376	0.86[EUR][1000 genomes]
rs73017939	0.89[EUR][1000 genomes]
rs7569147	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs7575729	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7585061	0.83[CEU][hapmap]
rs7597463	0.83[CEU][hapmap]
rs988445	0.93[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs998899	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[YRI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
3	chr2:168001000-168008600	Weak transcription	NHLF	lung
4	chr2:168001600-168005400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:168002200-168005400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:168005200-168005400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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