Variant report

Variant	rs4533448
Chromosome Location	chr2:168002725-168002726
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10451542	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.85[LWK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.82[EUR][1000 genomes]
rs1155284	0.93[CEU][hapmap]
rs11888230	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11893404	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11902653	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1346722	0.82[CEU][hapmap]
rs1479592	0.93[CEU][hapmap]
rs16853050	0.93[CEU][hapmap]
rs16853057	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs55733637	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58616240	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59504679	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6432979	0.81[EUR][1000 genomes]
rs66701411	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6711844	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes]
rs6720352	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs6720763	1.00[CEU][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs67386767	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67485531	0.93[EUR][1000 genomes]
rs67726376	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68108130	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73017939	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7556854	0.95[GIH][hapmap]
rs7569147	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs988445	1.00[CEU][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs998899	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
3	chr2:168000600-168003200	Weak transcription	HSMM	muscle
4	chr2:168001000-168008600	Weak transcription	NHLF	lung
5	chr2:168001600-168005400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:168002200-168005400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:168002400-168003200	Weak transcription	Fetal Intestine Large	intestine
8	chr2:168002400-168003200	Weak transcription	Fetal Intestine Small	intestine
9	chr2:168002400-168005200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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