Variant report

Variant	rs1155284
Chromosome Location	chr2:168003342-168003343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:167996633..167999387-chr2:168002848..168005501,2	K562	blood:

Variant related genes	Relation type
ENSG00000254552	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10451542	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1155285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694517	0.85[LWK][hapmap]
rs11888230	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs11893404	0.87[EUR][1000 genomes]
rs11902653	0.93[CEU][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs12105903	0.82[CHD][hapmap]
rs12692857	0.82[CHD][hapmap]
rs1346722	0.94[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.81[LWK][hapmap];0.83[TSI][hapmap];0.88[YRI][hapmap]
rs1479592	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16853050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16853057	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16853217	0.82[CHD][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap]
rs4000962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4533448	0.93[CEU][hapmap]
rs55733637	0.86[EUR][1000 genomes]
rs58616240	0.86[EUR][1000 genomes]
rs6432979	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432984	0.94[ASW][hapmap];0.88[MKK][hapmap];0.84[YRI][hapmap]
rs66701411	0.88[EUR][1000 genomes]
rs67074513	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6711844	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6720352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6720763	0.93[CEU][hapmap];0.82[CHB][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs6733384	0.83[LWK][hapmap]
rs67386767	0.87[EUR][1000 genomes]
rs67726376	0.86[EUR][1000 genomes]
rs73017939	0.89[EUR][1000 genomes]
rs7569147	0.93[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs7575729	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7580360	0.82[CHD][hapmap]
rs7585061	0.91[GIH][hapmap]
rs7597463	0.80[JPT][hapmap]
rs988445	0.93[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs998899	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1155284	GRB14	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
3	chr2:168001000-168008600	Weak transcription	NHLF	lung
4	chr2:168001600-168005400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:168002200-168005400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:168002400-168005200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:168003200-168004200	Enhancers	Fetal Intestine Large	intestine
8	chr2:168003200-168004400	Enhancers	Fetal Intestine Small	intestine

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