Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10451542	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1155284	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155285	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11888230	0.89[EUR][1000 genomes]
rs11893404	0.86[EUR][1000 genomes]
rs11902653	0.89[EUR][1000 genomes]
rs1346722	0.81[EUR][1000 genomes]
rs1479592	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16853050	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16853057	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4000962	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4533448	0.81[EUR][1000 genomes]
rs55733637	0.85[EUR][1000 genomes]
rs58616240	0.84[EUR][1000 genomes]
rs66701411	0.89[EUR][1000 genomes]
rs67074513	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6711844	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6720352	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6720763	0.88[EUR][1000 genomes]
rs67386767	0.86[EUR][1000 genomes]
rs67726376	0.85[EUR][1000 genomes]
rs73017939	0.88[EUR][1000 genomes]
rs7569147	0.87[EUR][1000 genomes]
rs7575729	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs988445	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs998899	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167992200-167999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:167993800-167999800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:167995000-167999600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:167996200-168001400	Enhancers	Fetal Heart	heart
5	chr2:167996200-168001400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:167997200-167999600	Weak transcription	Psoas Muscle	Psoas
7	chr2:167997400-167999600	Weak transcription	NHLF	lung
8	chr2:167997400-168001000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr2:167997600-168000800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:167998200-167999800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:167998200-167999800	Weak transcription	HSMM	muscle
12	chr2:167998200-168000000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:167999200-168001400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:167999400-168000000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:167999400-168002200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search: