Variant report

Variant	rs73017939
Chromosome Location	chr2:168004354-168004355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:167996633..167999387-chr2:168002848..168005501,2	K562	blood:

Variant related genes	Relation type
ENSG00000254552	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10451542	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1155284	0.89[EUR][1000 genomes]
rs1155285	0.89[EUR][1000 genomes]
rs11888230	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893377	0.86[ASN][1000 genomes]
rs11893404	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11893509	0.86[ASN][1000 genomes]
rs11902653	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1479592	0.85[EUR][1000 genomes]
rs16853050	0.89[EUR][1000 genomes]
rs16853057	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4000962	0.86[EUR][1000 genomes]
rs4533448	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs55733637	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58616240	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59504679	0.85[EUR][1000 genomes]
rs6432979	0.88[EUR][1000 genomes]
rs66701411	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67074513	0.86[EUR][1000 genomes]
rs6711844	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6720352	0.88[EUR][1000 genomes]
rs6720763	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67386767	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67485531	0.84[EUR][1000 genomes]
rs67726376	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68108130	0.82[EUR][1000 genomes]
rs7556854	0.86[ASN][1000 genomes]
rs7569147	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7575729	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs988445	0.94[EUR][1000 genomes]
rs998899	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
3	chr2:168001000-168008600	Weak transcription	NHLF	lung
4	chr2:168001600-168005400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:168002200-168005400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:168002400-168005200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:168003200-168004400	Enhancers	Fetal Intestine Small	intestine
8	chr2:168003800-168004400	Enhancers	HepG2	liver

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