Variant report

Variant	rs7569147
Chromosome Location	chr2:167989691-167989692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10451542	1.00[CEU][hapmap];0.81[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs1155284	0.93[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs1155285	0.86[EUR][1000 genomes]
rs11888230	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11893404	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11902653	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1346722	0.80[CEU][hapmap]
rs1479592	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs16853050	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs16853057	1.00[CEU][hapmap];0.81[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs4000962	0.82[EUR][1000 genomes]
rs4533448	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs55733637	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58616240	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6432979	0.87[EUR][1000 genomes]
rs66701411	0.93[EUR][1000 genomes]
rs67074513	0.91[EUR][1000 genomes]
rs6711844	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6720352	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs6720763	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67386767	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67726376	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73017939	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7556854	0.82[CHD][hapmap];0.81[GIH][hapmap]
rs7575729	0.86[EUR][1000 genomes]
rs988445	1.00[CEU][hapmap];0.81[GIH][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs998899	0.93[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167984600-167989800	Weak transcription	Fetal Thymus	thymus
2	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:167987200-167989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:167988600-167989800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:167988600-167990400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:167988600-167990400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr2:167988800-167991000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:167989000-167990400	Enhancers	Pancreas	Pancrea
10	chr2:167989200-167990000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:167989200-167990200	Weak transcription	HMEC	breast
12	chr2:167989200-167998600	Weak transcription	Left Ventricle	heart
13	chr2:167989400-167993400	Weak transcription	Psoas Muscle	Psoas
14	chr2:167989600-167989800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:167989600-167989800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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