Variant report

Variant	rs6733384
Chromosome Location	chr2:167933831-167933832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10211405	0.83[TSI][hapmap]
rs10497314	0.93[CEU][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes]
rs10497315	0.93[CEU][hapmap]
rs1155284	0.83[LWK][hapmap]
rs11694517	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap]
rs11899616	0.83[AMR][1000 genomes]
rs11900038	0.83[AMR][1000 genomes]
rs12105903	0.84[ASW][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes]
rs12619579	0.93[CEU][hapmap]
rs12692857	0.93[CEU][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs13339777	0.85[AMR][1000 genomes]
rs1346722	0.82[CEU][hapmap];0.86[LWK][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs1346723	0.84[ASW][hapmap];0.93[CEU][hapmap];0.82[CHD][hapmap];0.80[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes]
rs1429930	0.80[AMR][1000 genomes]
rs1511202	0.81[AFR][1000 genomes]
rs16852935	0.90[JPT][hapmap];0.81[YRI][hapmap]
rs16852941	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2390513	0.90[AMR][1000 genomes]
rs56836723	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59632215	0.83[AMR][1000 genomes]
rs59877654	0.90[AMR][1000 genomes]
rs61084716	0.80[AMR][1000 genomes]
rs6432973	0.81[AMR][1000 genomes]
rs6432976	0.81[AMR][1000 genomes]
rs67074513	0.83[AFR][1000 genomes]
rs6742332	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6743737	0.83[AMR][1000 genomes]
rs7557440	0.93[CEU][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes]
rs7580360	0.94[ASW][hapmap];0.93[CEU][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes]
rs7586785	0.93[CEU][hapmap]
rs7588368	0.90[AMR][1000 genomes]
rs7592671	0.89[ASW][hapmap];0.87[YRI][hapmap]
rs7599374	0.84[AFR][1000 genomes]
rs7606905	0.80[AMR][1000 genomes]
rs7607028	0.94[ASW][hapmap];0.86[CEU][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes]
rs891384	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs998899	0.83[LWK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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