Variant report

Variant	rs16852935
Chromosome Location	chr2:167926359-167926360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1367082	0.94[GIH][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs57195645	0.81[EUR][1000 genomes]
rs6733384	0.90[JPT][hapmap];0.81[YRI][hapmap]
rs73014186	0.81[EUR][1000 genomes]
rs7592671	0.84[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.84[TSI][hapmap];0.88[YRI][hapmap]
rs7599374	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167925400-167927400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:167925800-167927400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:167925800-167928200	Enhancers	HMEC	breast
4	chr2:167926000-167928200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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