Variant report

Variant	rs6432977
Chromosome Location	chr2:167989117-167989118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10497314	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10497315	0.87[CEU][hapmap]
rs11899616	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11899748	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11900038	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12619579	0.87[CEU][hapmap]
rs12692857	0.85[CEU][hapmap]
rs13339777	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1346723	0.85[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2390513	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56836723	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59632215	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59877654	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6432973	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6432974	1.00[CEU][hapmap]
rs6432975	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6432976	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6706173	0.80[EUR][1000 genomes]
rs6743737	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7556854	0.84[CEU][hapmap]
rs7557440	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7580360	0.85[CEU][hapmap]
rs7586785	0.87[CEU][hapmap]
rs7588368	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167984600-167989800	Weak transcription	Fetal Thymus	thymus
2	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:167987200-167989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:167988600-167989800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:167988600-167990400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:167988600-167990400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr2:167988800-167991000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:167989000-167989200	Enhancers	Left Ventricle	heart
10	chr2:167989000-167989200	Enhancers	HMEC	breast
11	chr2:167989000-167989400	Enhancers	Psoas Muscle	Psoas
12	chr2:167989000-167990400	Enhancers	Pancreas	Pancrea

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