Variant report

Variant	rs6446261
Chromosome Location	chr3:49394853-49394854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49394592..49396828-chr3:49447365..49450223,2	K562	blood:

Variant related genes	Relation type
ENSG00000145022	Chromatin interaction
ENSG00000067560	Chromatin interaction

rs_ID	r²[population]
rs4292261	1.00[AMR][1000 genomes]
rs6777731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800591	1.00[AMR][1000 genomes]
rs6806073	1.00[AMR][1000 genomes]
rs6808633	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7633189	1.00[AMR][1000 genomes]
rs7636222	1.00[AMR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49390800-49396600	Weak transcription	K562	blood
2	chr3:49392800-49395400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
3	chr3:49393600-49395000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
4	chr3:49393600-49395200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:49393600-49395200	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
6	chr3:49393600-49395200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
7	chr3:49393600-49395200	Transcr. at gene 5' and 3'	NHLF	lung
8	chr3:49393600-49395200	Transcr. at gene 5' and 3'	Osteobl	bone
9	chr3:49393600-49395400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:49393600-49396800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:49393600-49397000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:49393800-49395000	Active TSS	Brain Anterior Caudate	brain
13	chr3:49393800-49395000	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
14	chr3:49393800-49395000	Enhancers	Fetal Heart	heart
15	chr3:49393800-49395200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:49393800-49395200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
17	chr3:49393800-49395200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:49393800-49395200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:49393800-49395200	Transcr. at gene 5' and 3'	HSMMtube	muscle
20	chr3:49393800-49395200	Transcr. at gene 5' and 3'	NHEK	skin
21	chr3:49394000-49395000	Enhancers	Stomach Mucosa	stomach
22	chr3:49394000-49395200	Transcr. at gene 5' and 3'	NH-A	brain
23	chr3:49394000-49395400	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr3:49394000-49396200	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr3:49394200-49395000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr3:49394200-49395000	Enhancers	Fetal Brain Male	brain
27	chr3:49394200-49395000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:49394200-49395800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:49394200-49396000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:49394200-49396000	Active TSS	Brain Hippocampus Middle	brain
31	chr3:49394200-49396000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:49394200-49396000	Active TSS	Fetal Intestine Large	intestine
33	chr3:49394200-49396000	Active TSS	Fetal Lung	lung
34	chr3:49394200-49396000	Active TSS	Left Ventricle	heart
35	chr3:49394200-49396000	Active TSS	Right Atrium	heart
36	chr3:49394200-49396000	Active TSS	Right Ventricle	heart
37	chr3:49394200-49396000	Active TSS	Hela-S3	cervix
38	chr3:49394200-49396000	Active TSS	HSMM	muscle
39	chr3:49394200-49396200	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr3:49394200-49396200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:49394200-49396200	Active TSS	Fetal Kidney	kidney
42	chr3:49394200-49396200	Active TSS	Lung	lung
43	chr3:49394200-49396400	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr3:49394200-49396400	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr3:49394200-49396600	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr3:49394400-49395000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:49394400-49395800	Active TSS	GM12878-XiMat	blood
48	chr3:49394400-49396000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:49394400-49396000	Active TSS	Liver	Liver
50	chr3:49394400-49396000	Active TSS	HepG2	liver

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