Variant report

Variant	rs6800591
Chromosome Location	chr3:49632522-49632523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2230149	1.00[EUR][1000 genomes]
rs34379671	1.00[AMR][1000 genomes]
rs35481257	1.00[AMR][1000 genomes]
rs6446261	1.00[AMR][1000 genomes]
rs6772424	1.00[AMR][1000 genomes]
rs6777731	1.00[AMR][1000 genomes]
rs6806073	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808633	1.00[AMR][1000 genomes]
rs7615240	1.00[AMR][1000 genomes]
rs7623582	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626820	1.00[AMR][1000 genomes]
rs7633189	1.00[AMR][1000 genomes]
rs7634945	1.00[AMR][1000 genomes]
rs7636222	1.00[AMR][1000 genomes]
rs7637266	1.00[AMR][1000 genomes]
rs7641976	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49630800-49636800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:49631000-49639600	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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