Variant report

Variant	rs6806073
Chromosome Location	chr3:49609303-49609304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2230149	1.00[EUR][1000 genomes]
rs34379671	1.00[AMR][1000 genomes]
rs35481257	1.00[AMR][1000 genomes]
rs6446261	1.00[AMR][1000 genomes]
rs6772424	1.00[AMR][1000 genomes]
rs6777731	1.00[AMR][1000 genomes]
rs6800591	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808633	1.00[ASW][hapmap];1.00[LWK][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7623582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626820	1.00[AMR][1000 genomes]
rs7633189	1.00[AMR][1000 genomes]
rs7634945	1.00[AMR][1000 genomes]
rs7636222	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7637266	1.00[AMR][1000 genomes]
rs7641976	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49596000-49615000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:49596000-49616800	Weak transcription	Fetal Brain Female	brain
3	chr3:49601200-49612200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:49605800-49609400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:49607800-49609400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:49608600-49615600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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