Variant report

Variant	rs7636222
Chromosome Location	chr3:49529438-49529439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49506988..49509379-chr3:49529279..49532110,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173402	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34379671	1.00[AMR][1000 genomes]
rs6446261	1.00[AMR][1000 genomes]
rs6772424	1.00[AMR][1000 genomes]
rs6777731	1.00[AMR][1000 genomes]
rs6800591	1.00[AMR][1000 genomes]
rs6806073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6808633	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7623582	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626820	1.00[AMR][1000 genomes]
rs7633189	1.00[AMR][1000 genomes]
rs7634945	1.00[AMR][1000 genomes]
rs7641976	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49509600-49530800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:49509600-49537800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:49509800-49531000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:49509800-49537600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:49509800-49547800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:49510000-49535600	Weak transcription	NHLF	lung
7	chr3:49510000-49547800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:49514400-49532400	Weak transcription	GM12878-XiMat	blood
9	chr3:49514600-49548000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:49514800-49532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:49515000-49532800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:49515000-49535400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:49515200-49532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:49515200-49532400	Weak transcription	Colonic Mucosa	Colon
15	chr3:49515400-49531000	Weak transcription	Gastric	stomach
16	chr3:49515400-49547800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:49515400-49547800	Weak transcription	Fetal Brain Female	brain
18	chr3:49515400-49548800	Weak transcription	Esophagus	oesophagus
19	chr3:49516800-49532400	Weak transcription	Small Intestine	intestine
20	chr3:49516800-49534800	Weak transcription	Liver	Liver
21	chr3:49516800-49537600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:49517000-49547800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:49517200-49547800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:49517400-49530600	Weak transcription	Thymus	Thymus
25	chr3:49519400-49530600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr3:49519400-49530800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr3:49519400-49535200	Weak transcription	K562	blood
28	chr3:49520000-49530200	Weak transcription	Fetal Thymus	thymus
29	chr3:49520400-49532800	Weak transcription	Primary B cells from cord blood	blood
30	chr3:49522200-49530600	Weak transcription	Aorta	Aorta
31	chr3:49522200-49530800	Weak transcription	Right Ventricle	heart
32	chr3:49522200-49547800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:49522400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:49522400-49548000	Weak transcription	Spleen	Spleen
35	chr3:49522800-49530200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:49522800-49531600	Weak transcription	Lung	lung
37	chr3:49523000-49529800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:49523200-49531000	Weak transcription	Brain Anterior Caudate	brain
39	chr3:49523400-49531000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:49523400-49531000	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:49523400-49531000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:49523400-49531200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:49523400-49548000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr3:49523400-49548000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr3:49523600-49530200	Weak transcription	Fetal Kidney	kidney
46	chr3:49523600-49530600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:49523600-49530800	Weak transcription	HepG2	liver
48	chr3:49523600-49530800	Weak transcription	Osteobl	bone
49	chr3:49523600-49531000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:49523600-49531000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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