Variant report

Variant	rs6454127
Chromosome Location	chr6:63991047-63991048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12111218	1.00[ASW][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs12111488	1.00[ASW][hapmap]
rs57192996	0.85[AFR][1000 genomes]
rs59514171	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60018171	0.81[AFR][1000 genomes]
rs6926934	0.88[AFR][1000 genomes]
rs6934571	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936427	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7764987	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs7776434	1.00[ASW][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63985200-64014200	Weak transcription	A549	lung
2	chr6:63986200-63992000	Weak transcription	Liver	Liver
3	chr6:63987000-63991800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:63989400-63995400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:63989600-63992200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:63990200-63992000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:63990600-63991200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:63990600-63991600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:63990600-63992000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:63990800-63992000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:63990800-64003200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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