Variant report

Variant	rs6456835
Chromosome Location	chr6:28701492-28701493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27112544..27115290-chr6:28699620..28702018,2	K562	blood:
2	chr6:27774714..27777094-chr6:28701466..28704120,2	K562	blood:
3	chr6:28700497..28703412-chr6:28724677..28728589,3	K562	blood:
4	chr6:28701062..28703950-chr6:33822430..33824102,2	MCF-7	breast:
5	chr6:28660878..28662982-chr6:28701014..28703051,2	K562	blood:
6	chr6:28701328..28705041-chr6:28730739..28732422,3	K562	blood:

Variant related genes	Relation type
ENSG00000217862	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000196747	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1233579	0.94[EUR][1000 genomes]
rs1233580	0.94[EUR][1000 genomes]
rs1233581	0.94[EUR][1000 genomes]
rs1233583	0.94[EUR][1000 genomes]
rs1233593	0.94[EUR][1000 genomes]
rs1233594	0.94[EUR][1000 genomes]
rs1233599	0.91[EUR][1000 genomes]
rs1233600	0.91[EUR][1000 genomes]
rs1233604	0.91[EUR][1000 genomes]
rs1233618	0.91[EUR][1000 genomes]
rs1233620	0.91[EUR][1000 genomes]
rs1233623	0.91[EUR][1000 genomes]
rs1238262	0.94[EUR][1000 genomes]
rs1311911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1311912	0.94[EUR][1000 genomes]
rs1311913	0.94[EUR][1000 genomes]
rs13194504	0.89[EUR][1000 genomes]
rs13217472	0.94[EUR][1000 genomes]
rs1742743	0.93[EUR][1000 genomes]
rs3131343	0.80[EUR][1000 genomes]
rs3132373	0.80[EUR][1000 genomes]
rs34724414	0.89[EUR][1000 genomes]
rs35044849	0.89[EUR][1000 genomes]
rs35243068	0.94[EUR][1000 genomes]
rs6908726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7761321	0.80[EUR][1000 genomes]
rs7764642	0.89[EUR][1000 genomes]
rs7767099	0.80[EUR][1000 genomes]
rs9257133	0.94[EUR][1000 genomes]
rs9257136	0.94[EUR][1000 genomes]
rs9257137	0.94[EUR][1000 genomes]
rs9257140	0.94[EUR][1000 genomes]
rs9257167	0.91[EUR][1000 genomes]
rs9257183	0.91[EUR][1000 genomes]
rs9257184	0.91[EUR][1000 genomes]
rs9257187	0.91[EUR][1000 genomes]
rs9257188	0.91[EUR][1000 genomes]
rs9257189	0.91[EUR][1000 genomes]
rs9257192	0.91[EUR][1000 genomes]
rs9257217	0.80[EUR][1000 genomes]
rs9393926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9393929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28698000-28701600	Enhancers	K562	blood
2	chr6:28698000-28701800	Weak transcription	HMEC	breast
3	chr6:28698400-28703000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:28701200-28702200	ZNF genes & repeats	Right Atrium	heart
5	chr6:28701400-28701600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr6:28701400-28701600	Bivalent Enhancer	Brain Hippocampus Middle	brain
7	chr6:28701400-28702400	Bivalent/Poised TSS	Placenta	Placenta

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