Variant report
| Variant | rs9393926 |
|---|---|
| Chromosome Location | chr6:28682725-28682726 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000196331 | Chromatin interaction |
| ENSG00000233224 | Chromatin interaction |
| ENSG00000197153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs1233579 | 0.91[EUR][1000 genomes] |
| rs1233580 | 0.91[EUR][1000 genomes] |
| rs1233581 | 0.91[EUR][1000 genomes] |
| rs1233583 | 0.91[EUR][1000 genomes] |
| rs1233593 | 0.91[EUR][1000 genomes] |
| rs1233594 | 0.91[EUR][1000 genomes] |
| rs1233599 | 0.87[EUR][1000 genomes] |
| rs1233600 | 0.87[EUR][1000 genomes] |
| rs1233604 | 0.87[EUR][1000 genomes] |
| rs1233618 | 0.87[EUR][1000 genomes] |
| rs1233620 | 0.87[EUR][1000 genomes] |
| rs1233623 | 0.87[EUR][1000 genomes] |
| rs1238262 | 0.91[EUR][1000 genomes] |
| rs1311911 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1311912 | 0.91[EUR][1000 genomes] |
| rs1311913 | 0.91[EUR][1000 genomes] |
| rs13194504 | 0.93[EUR][1000 genomes] |
| rs13217472 | 0.98[EUR][1000 genomes] |
| rs1742743 | 0.89[EUR][1000 genomes] |
| rs34724414 | 0.93[EUR][1000 genomes] |
| rs35044849 | 0.93[EUR][1000 genomes] |
| rs35243068 | 0.98[EUR][1000 genomes] |
| rs6456835 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6908726 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7764642 | 0.86[EUR][1000 genomes] |
| rs9257133 | 0.91[EUR][1000 genomes] |
| rs9257136 | 0.91[EUR][1000 genomes] |
| rs9257137 | 0.91[EUR][1000 genomes] |
| rs9257140 | 0.91[EUR][1000 genomes] |
| rs9257167 | 0.87[EUR][1000 genomes] |
| rs9257183 | 0.87[EUR][1000 genomes] |
| rs9257184 | 0.87[EUR][1000 genomes] |
| rs9257187 | 0.87[EUR][1000 genomes] |
| rs9257188 | 0.87[EUR][1000 genomes] |
| rs9257189 | 0.87[EUR][1000 genomes] |
| rs9257192 | 0.87[EUR][1000 genomes] |
| rs9393925 | 0.83[EUR][1000 genomes] |
| rs9393929 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9393926 | ZFP57 | Cis_1M | lymphoblastoid | RTeQTL |
| rs9393926 | BTN3A2 | Cis_chr | lymphoblastoid | RTeQTL |
| rs9393926 | BTN3A2///BTN3A3 | Cis_chr | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28680200-28684400 | Weak transcription | K562 | blood |
