Variant report

Variant	rs35243068
Chromosome Location	chr6:28673434-28673435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27859524..27861872-chr6:28672983..28674513,2	K562	blood:
2	chr6:28673080..28675380-chr6:28676170..28678591,4	K562	blood:
3	chr6:28673375..28676258-chr6:28747112..28749974,2	K562	blood:

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1233579	0.93[EUR][1000 genomes]
rs1233580	0.93[EUR][1000 genomes]
rs1233581	0.93[EUR][1000 genomes]
rs1233583	0.93[EUR][1000 genomes]
rs1233593	0.93[EUR][1000 genomes]
rs1233594	0.93[EUR][1000 genomes]
rs1233599	0.89[EUR][1000 genomes]
rs1233600	0.89[EUR][1000 genomes]
rs1233604	0.89[EUR][1000 genomes]
rs1233618	0.89[EUR][1000 genomes]
rs1233620	0.89[EUR][1000 genomes]
rs1233623	0.89[EUR][1000 genomes]
rs1238262	0.93[EUR][1000 genomes]
rs1311911	0.91[EUR][1000 genomes]
rs1311912	0.93[EUR][1000 genomes]
rs1311913	0.93[EUR][1000 genomes]
rs13191038	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13194504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13217472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1742743	0.91[EUR][1000 genomes]
rs3118359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3118360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3131336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3131341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3132385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3132389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3135299	1.00[AMR][1000 genomes]
rs34724414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35044849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4947336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6456835	0.94[EUR][1000 genomes]
rs6908726	0.98[EUR][1000 genomes]
rs7764642	0.87[EUR][1000 genomes]
rs9257133	0.93[EUR][1000 genomes]
rs9257136	0.93[EUR][1000 genomes]
rs9257137	0.93[EUR][1000 genomes]
rs9257140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9257167	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257183	0.89[EUR][1000 genomes]
rs9257184	0.89[EUR][1000 genomes]
rs9257187	0.89[EUR][1000 genomes]
rs9257188	0.89[EUR][1000 genomes]
rs9257189	0.89[EUR][1000 genomes]
rs9257192	0.89[EUR][1000 genomes]
rs9393925	0.81[EUR][1000 genomes]
rs9393926	0.98[EUR][1000 genomes]
rs9393929	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs35243068	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs35243068	ZFP57	Cis_1M	lymphoblastoid	RTeQTL
rs35243068	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28668600-28676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:28671800-28674600	Weak transcription	K562	blood

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