Variant report

Variant	rs1311913
Chromosome Location	chr6:28717178-28717179
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
2	chr6:28690957..28693592-chr6:28715532..28717190,2	K562	blood:
3	chr6:28715243..28717665-chr6:28720660..28723020,3	MCF-7	breast:
4	chr6:28675937..28678436-chr6:28714378..28717969,3	K562	blood:
5	chr6:27560152..27562900-chr6:28715549..28717321,2	K562	blood:
6	chr6:28715456..28717340-chr6:28801713..28804501,2	K562	blood:
7	chr6:28709763..28712235-chr6:28715610..28717205,2	K562	blood:
8	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:

No data

Extended variants
information (count: 86 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1233579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233580	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233581	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233599	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233600	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233623	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1238262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1311911	0.98[EUR][1000 genomes]
rs1311912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13194504	0.87[EUR][1000 genomes]
rs13217472	0.93[EUR][1000 genomes]
rs1742743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3118357	0.80[EUR][1000 genomes]
rs3118359	0.80[EUR][1000 genomes]
rs3118360	0.80[EUR][1000 genomes]
rs3118367	0.80[EUR][1000 genomes]
rs3130838	0.80[EUR][1000 genomes]
rs3131094	0.80[EUR][1000 genomes]
rs3131095	0.80[EUR][1000 genomes]
rs3131096	0.80[EUR][1000 genomes]
rs3131097	0.80[EUR][1000 genomes]
rs3131336	0.80[EUR][1000 genomes]
rs3131340	0.84[EUR][1000 genomes]
rs3131341	0.84[EUR][1000 genomes]
rs3131343	0.85[EUR][1000 genomes]
rs3131345	0.80[EUR][1000 genomes]
rs3132373	0.85[EUR][1000 genomes]
rs3132376	0.80[EUR][1000 genomes]
rs3132384	0.80[EUR][1000 genomes]
rs3132385	0.80[EUR][1000 genomes]
rs3132388	0.80[EUR][1000 genomes]
rs3132389	0.80[EUR][1000 genomes]
rs3132391	0.80[EUR][1000 genomes]
rs3132392	0.80[EUR][1000 genomes]
rs3132396	0.84[EUR][1000 genomes]
rs3135293	0.80[EUR][1000 genomes]
rs3135294	0.82[EUR][1000 genomes]
rs3135295	0.80[EUR][1000 genomes]
rs3135300	0.80[EUR][1000 genomes]
rs3135302	0.80[EUR][1000 genomes]
rs3135304	0.80[EUR][1000 genomes]
rs3135306	0.80[EUR][1000 genomes]
rs3135307	0.80[EUR][1000 genomes]
rs3135308	0.80[EUR][1000 genomes]
rs3135309	0.80[EUR][1000 genomes]
rs3135310	0.80[EUR][1000 genomes]
rs3135311	0.80[EUR][1000 genomes]
rs3135312	0.80[EUR][1000 genomes]
rs3135313	0.80[EUR][1000 genomes]
rs3135316	0.80[EUR][1000 genomes]
rs34724414	0.87[EUR][1000 genomes]
rs35044849	0.87[EUR][1000 genomes]
rs35243068	0.93[EUR][1000 genomes]
rs4324798	0.84[EUR][1000 genomes]
rs6456835	0.94[EUR][1000 genomes]
rs6908726	0.91[EUR][1000 genomes]
rs7761321	0.85[EUR][1000 genomes]
rs7764642	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7766699	0.82[EUR][1000 genomes]
rs7767099	0.85[EUR][1000 genomes]
rs9257133	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9257136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9257137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9257140	1.00[EUR][1000 genomes]
rs9257167	0.96[EUR][1000 genomes]
rs9257183	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9257184	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9257187	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9257188	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9257189	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9257192	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9257217	0.85[EUR][1000 genomes]
rs9257223	0.84[EUR][1000 genomes]
rs9257227	0.80[EUR][1000 genomes]
rs9257262	0.80[EUR][1000 genomes]
rs9257272	0.80[EUR][1000 genomes]
rs9257331	0.80[EUR][1000 genomes]
rs9393926	0.91[EUR][1000 genomes]
rs9393929	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1311913	ZFP57	Cis_1M	lymphoblastoid	RTeQTL
rs1311913	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs1311913	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28715600-28724800	Weak transcription	HMEC	breast
3	chr6:28716200-28719400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:28716400-28717600	Enhancers	K562	blood
5	chr6:28716400-28719000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:28716600-28720200	Weak transcription	Hela-S3	cervix
7	chr6:28716600-28720400	Weak transcription	A549	lung

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