Variant report

Variant	rs6479064
Chromosome Location	chr9:104521733-104521734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10512288	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10819985	0.86[AFR][1000 genomes]
rs10989610	0.88[AFR][1000 genomes]
rs16920674	0.83[AFR][1000 genomes]
rs2069324	0.92[AFR][1000 genomes]
rs2069325	0.94[AFR][1000 genomes]
rs4743485	0.86[AFR][1000 genomes]
rs55665802	0.90[EUR][1000 genomes]
rs55682946	0.90[EUR][1000 genomes]
rs55734521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55971755	0.90[EUR][1000 genomes]
rs56236943	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59275233	0.92[AFR][1000 genomes]
rs62576354	0.81[AFR][1000 genomes]
rs62577460	0.94[AFR][1000 genomes]
rs62577463	0.94[AFR][1000 genomes]
rs62577464	0.94[AFR][1000 genomes]
rs62577465	0.85[EUR][1000 genomes]
rs62582206	0.85[EUR][1000 genomes]
rs62582209	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479062	0.86[AMR][1000 genomes]
rs7020326	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7030816	0.83[AFR][1000 genomes]
rs7032033	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7033120	0.81[AFR][1000 genomes]
rs7041051	0.91[AFR][1000 genomes]
rs7849732	0.83[AFR][1000 genomes]
rs7849944	0.83[AFR][1000 genomes]
rs7851440	1.00[EUR][1000 genomes]
rs7853624	0.90[EUR][1000 genomes]
rs7858895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864316	0.85[AFR][1000 genomes]
rs7864726	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046614	chr9:104492314-104686326	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1054992	chr9:104494816-104771134	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1043967	chr9:104498664-104636328	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1036387	chr9:104503439-104526858	Enhancers Flanking Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104520800-104521800	Enhancers	Adipose Nuclei	Adipose
2	chr9:104521400-104522400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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