Variant report

Variant	rs7041051
Chromosome Location	chr9:104492591-104492592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10117679	0.89[TSI][hapmap]
rs10512288	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10819985	0.86[AFR][1000 genomes]
rs10989610	0.83[AFR][1000 genomes]
rs16920674	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2069324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2069325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2184960	0.80[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.95[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs41343045	0.89[TSI][hapmap]
rs4743485	0.86[AFR][1000 genomes]
rs55665802	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55682946	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55971755	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56236943	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59275233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62576354	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62576359	0.91[EUR][1000 genomes]
rs62577460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62577463	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62577464	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62577465	0.85[EUR][1000 genomes]
rs62582206	0.85[EUR][1000 genomes]
rs6479062	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6479064	0.91[AFR][1000 genomes]
rs7020326	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7030816	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7031850	0.91[EUR][1000 genomes]
rs7032033	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7033120	0.84[AFR][1000 genomes]
rs7034155	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7043125	0.91[EUR][1000 genomes]
rs7043519	0.91[EUR][1000 genomes]
rs7849732	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7849944	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7853624	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7864726	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs870870	0.86[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046614	chr9:104492314-104686326	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104490600-104495000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:104490600-104496000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:104492400-104493800	Weak transcription	Liver	Liver

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