Variant report

Variant	rs2069325
Chromosome Location	chr9:104496792-104496793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10512288	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10819985	0.89[AFR][1000 genomes]
rs10989610	0.86[AFR][1000 genomes]
rs16920674	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2069324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743485	0.89[AFR][1000 genomes]
rs55665802	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55682946	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55971755	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56236943	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59275233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62576354	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62576359	0.91[EUR][1000 genomes]
rs62577460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577465	0.85[EUR][1000 genomes]
rs62582206	0.85[EUR][1000 genomes]
rs6479062	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6479064	0.94[AFR][1000 genomes]
rs7020326	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7030816	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7031850	0.91[EUR][1000 genomes]
rs7032033	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7033120	0.83[AFR][1000 genomes]
rs7034155	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7041051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7043125	0.91[EUR][1000 genomes]
rs7043519	0.91[EUR][1000 genomes]
rs7849732	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7849944	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7853624	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7864316	0.81[AFR][1000 genomes]
rs7864726	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046614	chr9:104492314-104686326	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1054992	chr9:104494816-104771134	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3482600	chr9:104496270-104498449	Bivalent/Poised TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3482595	chr9:104496552-104498337	Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3482598	chr9:104496593-104498320	Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3482599	chr9:104496602-104498298	Bivalent/Poised TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3482597	chr9:104496621-104498276	Bivalent/Poised TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3482601	chr9:104496701-104498219	Bivalent/Poised TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv14432	chr9:104496753-104498220	Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv614963	chr9:104496792-104498057	Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
14	nsv614964	chr9:104496792-104498109	Bivalent/Poised TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv614965	chr9:104496792-104498188	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104494200-104499600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links