Variant report
| Variant | rs7043125 |
|---|---|
| Chromosome Location | chr9:104473752-104473753 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:104472870..104474526-chr9:104475820..104477413,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10117679 | 0.89[TSI][hapmap] |
| rs10512288 | 1.00[EUR][1000 genomes] |
| rs16920674 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2069324 | 0.91[EUR][1000 genomes] |
| rs2069325 | 0.91[EUR][1000 genomes] |
| rs2184960 | 1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap] |
| rs41343045 | 0.89[TSI][hapmap] |
| rs56236943 | 1.00[EUR][1000 genomes] |
| rs59275233 | 0.89[EUR][1000 genomes] |
| rs62576354 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62576359 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62577460 | 0.91[EUR][1000 genomes] |
| rs62577463 | 0.84[EUR][1000 genomes] |
| rs62577464 | 0.82[EUR][1000 genomes] |
| rs62577465 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62582206 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6479062 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7020326 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7030816 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7031850 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7032033 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7034155 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7041051 | 0.91[EUR][1000 genomes] |
| rs7043519 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7849732 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7849944 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7851440 | 1.00[ASN][1000 genomes] |
| rs7864726 | 1.00[EUR][1000 genomes] |
| rs870870 | 1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046975 | chr9:104167583-104659873 | Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv949579 | chr9:104229820-104512923 | Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv831672 | chr9:104300755-104480849 | Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1046590 | chr9:104450624-104848588 | Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:104468000-104474400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr9:104473600-104473800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
