Variant report

Variant	rs648006
Chromosome Location	chr3:99375151-99375152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1578797	0.85[YRI][hapmap]
rs1717608	0.85[YRI][hapmap]
rs486688	0.85[YRI][hapmap]
rs596300	0.85[YRI][hapmap]
rs641461	0.85[YRI][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs648006	C3orf26	cis	multi-tissue	Pritchard

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99370600-99375400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:99370600-99378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:99370800-99377200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99370800-99377600	Weak transcription	HMEC	breast
5	chr3:99371000-99375200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:99371400-99377000	Weak transcription	NHLF	lung
7	chr3:99371600-99377400	Weak transcription	HSMMtube	muscle
8	chr3:99372200-99377400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:99372400-99377200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:99372400-99377600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:99372600-99377000	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:99372600-99379200	Weak transcription	Lung	lung
13	chr3:99373000-99377000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:99373000-99377000	Weak transcription	Right Atrium	heart
15	chr3:99373200-99385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:99373400-99377400	Weak transcription	NHEK	skin
17	chr3:99373600-99376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:99373800-99376600	Genic enhancers	HUVEC	blood vessel
19	chr3:99373800-99379400	Enhancers	NHDF-Ad	bronchial
20	chr3:99373800-99385200	Genic enhancers	Osteobl	bone
21	chr3:99374000-99375400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:99374000-99379600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:99374200-99377000	Weak transcription	Aorta	Aorta
24	chr3:99374200-99377200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:99374200-99379200	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr3:99374400-99376200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr3:99374400-99377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:99374400-99377600	Weak transcription	Adipose Nuclei	Adipose
29	chr3:99374400-99377800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr3:99374400-99380200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:99374600-99375800	Weak transcription	HSMM	muscle
32	chr3:99374800-99377000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:99374800-99377200	Enhancers	NH-A	brain
34	chr3:99375000-99376200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:99375000-99379400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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