Variant report

Variant	rs486688
Chromosome Location	chr3:99394807-99394808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1578796	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578797	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841679	0.82[YRI][hapmap]
rs1708168	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1717608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717610	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2458456	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2944620	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs594827	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs596300	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs621061	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs639355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs641461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs648006	0.85[YRI][hapmap]
rs681819	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99391800-99396400	Genic enhancers	Osteobl	bone
3	chr3:99391800-99396600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:99392600-99395200	Genic enhancers	Muscle Satellite Cultured Cells	--
5	chr3:99393000-99395000	Strong transcription	HUVEC	blood vessel
6	chr3:99393400-99396600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:99393400-99396800	Weak transcription	Left Ventricle	heart
8	chr3:99393600-99396200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:99393600-99396400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:99393600-99396400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:99393600-99396400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:99393600-99396400	Weak transcription	NHDF-Ad	bronchial
13	chr3:99393600-99396400	Weak transcription	NHLF	lung
14	chr3:99393600-99396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:99393600-99396600	Weak transcription	Aorta	Aorta
16	chr3:99393600-99396800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:99393600-99396800	Weak transcription	Psoas Muscle	Psoas
18	chr3:99394000-99396200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:99394000-99396200	Strong transcription	HSMM	muscle
20	chr3:99394000-99396200	Weak transcription	NHEK	skin
21	chr3:99394000-99396400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:99394000-99396400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:99394000-99396400	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:99394200-99396200	Weak transcription	HSMMtube	muscle
26	chr3:99394200-99396400	Weak transcription	NH-A	brain
27	chr3:99394600-99396400	Weak transcription	HMEC	breast
28	chr3:99394600-99396600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:99394800-99396000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:99394800-99396800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:99394800-99397400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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