Variant report

Variant	rs16841679
Chromosome Location	chr3:99460203-99460204
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1021103	0.81[CHB][hapmap]
rs1038294	0.81[CHB][hapmap]
rs1578796	1.00[YRI][hapmap]
rs1578797	0.82[YRI][hapmap]
rs1610264	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap]
rs1688766	0.81[CHB][hapmap]
rs1688771	0.81[CHB][hapmap]
rs1717608	0.82[YRI][hapmap]
rs486688	0.82[YRI][hapmap]
rs596300	0.82[YRI][hapmap]
rs641461	0.82[YRI][hapmap]
rs681819	1.00[YRI][hapmap]
rs704582	0.81[CHB][hapmap]
rs793492	0.81[CHB][hapmap]
rs793496	0.81[CHB][hapmap]
rs793499	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99440400-99471000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99441400-99466800	Weak transcription	NH-A	brain
3	chr3:99443400-99471400	Weak transcription	Aorta	Aorta
4	chr3:99449600-99463400	Weak transcription	HUVEC	blood vessel
5	chr3:99450400-99463600	Weak transcription	NHDF-Ad	bronchial
6	chr3:99450400-99463800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:99451000-99460400	Weak transcription	Osteobl	bone
8	chr3:99458600-99461600	Weak transcription	HSMM	muscle
9	chr3:99458600-99466600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:99458600-99466800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:99458600-99470000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:99458600-99470200	Weak transcription	Lung	lung
13	chr3:99458600-99471000	Weak transcription	NHLF	lung
14	chr3:99458600-99471200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:99458600-99472200	Weak transcription	Adipose Nuclei	Adipose
16	chr3:99459400-99460400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:99459600-99460400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:99460200-99460600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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