Variant report

Variant	rs596300
Chromosome Location	chr3:99383030-99383031
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1578796	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1578797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16841679	0.82[YRI][hapmap]
rs1708168	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1717608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1717610	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2458456	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2944620	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs486688	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs594827	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs621061	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs639355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs641461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648006	0.85[YRI][hapmap]
rs681819	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99373200-99385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:99373800-99385200	Genic enhancers	Osteobl	bone
3	chr3:99377800-99383400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:99378200-99383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99378200-99383800	Weak transcription	Right Atrium	heart
6	chr3:99378800-99383400	Weak transcription	Aorta	Aorta
7	chr3:99379000-99384800	Weak transcription	NHLF	lung
8	chr3:99379200-99385000	Weak transcription	NHEK	skin
9	chr3:99379200-99388600	Weak transcription	NH-A	brain
10	chr3:99379400-99383600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:99379400-99383800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:99379400-99384800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:99379400-99385200	Weak transcription	Adipose Nuclei	Adipose
14	chr3:99379400-99385800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:99379600-99384000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:99379600-99384800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:99381000-99385400	Genic enhancers	HUVEC	blood vessel
18	chr3:99381200-99383200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:99381200-99383400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:99381400-99383200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:99381400-99383200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:99381400-99383600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:99381600-99383200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr3:99381600-99383200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:99381600-99383400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:99381600-99383800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:99381800-99383200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr3:99382000-99384000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:99382000-99390200	Genic enhancers	Muscle Satellite Cultured Cells	--
30	chr3:99382200-99383200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr3:99382400-99383600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:99382600-99383800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:99382600-99384200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:99382800-99383200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:99382800-99383200	Enhancers	Brain Anterior Caudate	brain
36	chr3:99382800-99383800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:99382800-99384200	Enhancers	NHDF-Ad	bronchial
38	chr3:99382800-99385000	Strong transcription	HSMM	muscle

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