Variant report

Variant	rs621061
Chromosome Location	chr3:99410661-99410662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL8A1-3	chr3:99410243-99410715	NONHSAT090848

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1578796	0.84[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1578797	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1708168	0.94[ASN][1000 genomes]
rs1717608	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1717610	0.94[ASN][1000 genomes]
rs2458456	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs486688	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs596300	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs639355	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs641461	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs681819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397200-99411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:99397800-99418000	Weak transcription	NHLF	lung
6	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:99403800-99418200	Weak transcription	Ovary	ovary
8	chr3:99404200-99413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:99406400-99411600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:99407000-99419200	Weak transcription	Adipose Nuclei	Adipose
11	chr3:99407600-99418800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:99408200-99413000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:99408800-99412800	Strong transcription	Osteobl	bone
14	chr3:99408800-99413400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:99409200-99413000	Strong transcription	HSMM	muscle
16	chr3:99409200-99418800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:99409600-99411400	Strong transcription	NHEK	skin
18	chr3:99409600-99411600	Strong transcription	NH-A	brain
19	chr3:99409800-99411800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:99409800-99412200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99409800-99415200	Strong transcription	HUVEC	blood vessel
22	chr3:99410200-99411600	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr3:99410200-99412800	Weak transcription	NHDF-Ad	bronchial
24	chr3:99410200-99418400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:99410400-99412400	Strong transcription	Aorta	Aorta

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