Variant report

Variant	rs681819
Chromosome Location	chr3:99414198-99414199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:99414163-99414386	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000263810	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1578796	0.92[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1578797	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16841679	1.00[YRI][hapmap]
rs1708168	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717608	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1717610	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2944620	0.83[AMR][1000 genomes]
rs486688	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs596300	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs621061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs639355	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs641461	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793482	0.81[CEU][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99397800-99418000	Weak transcription	NHLF	lung
5	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:99403800-99418200	Weak transcription	Ovary	ovary
7	chr3:99407000-99419200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:99407600-99418800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:99409200-99418800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:99409800-99415200	Strong transcription	HUVEC	blood vessel
11	chr3:99410200-99418400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99411400-99439600	Weak transcription	NHEK	skin
13	chr3:99411600-99414400	Genic enhancers	Muscle Satellite Cultured Cells	--
14	chr3:99411600-99415000	Weak transcription	NH-A	brain
15	chr3:99411800-99426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:99412000-99414800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:99412400-99414400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:99412400-99415200	Weak transcription	Aorta	Aorta
19	chr3:99413000-99415200	Weak transcription	HSMM	muscle
20	chr3:99413000-99423400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:99413200-99415200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:99413400-99414200	Genic enhancers	Osteobl	bone
23	chr3:99413600-99422800	Weak transcription	HMEC	breast
24	chr3:99413800-99414600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:99413800-99417600	Weak transcription	NHDF-Ad	bronchial
26	chr3:99413800-99418400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:99413800-99423800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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