Variant report

Variant	rs2944620
Chromosome Location	chr3:99376749-99376750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99372823..99375416-chr3:99376039..99377991,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1578796	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1578797	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1708168	0.83[AMR][1000 genomes]
rs1717608	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1717610	0.83[AMR][1000 genomes]
rs486688	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs594827	0.82[EUR][1000 genomes]
rs596300	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs641461	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs681819	0.83[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99370600-99378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:99370800-99377200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99370800-99377600	Weak transcription	HMEC	breast
4	chr3:99371400-99377000	Weak transcription	NHLF	lung
5	chr3:99371600-99377400	Weak transcription	HSMMtube	muscle
6	chr3:99372200-99377400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:99372400-99377200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:99372400-99377600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:99372600-99377000	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:99372600-99379200	Weak transcription	Lung	lung
11	chr3:99373000-99377000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:99373000-99377000	Weak transcription	Right Atrium	heart
13	chr3:99373200-99385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:99373400-99377400	Weak transcription	NHEK	skin
15	chr3:99373800-99379400	Enhancers	NHDF-Ad	bronchial
16	chr3:99373800-99385200	Genic enhancers	Osteobl	bone
17	chr3:99374000-99379600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:99374200-99377000	Weak transcription	Aorta	Aorta
19	chr3:99374200-99377200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:99374200-99379200	Genic enhancers	Muscle Satellite Cultured Cells	--
21	chr3:99374400-99377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:99374400-99377600	Weak transcription	Adipose Nuclei	Adipose
23	chr3:99374400-99377800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:99374400-99380200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:99374800-99377000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:99374800-99377200	Enhancers	NH-A	brain
27	chr3:99375000-99379400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:99375200-99378600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:99375800-99377200	Strong transcription	HSMM	muscle
30	chr3:99375800-99378000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:99376000-99381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:99376000-99381800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:99376200-99381400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr3:99376600-99377200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:99376600-99378600	Enhancers	HUVEC	blood vessel

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