Variant report

Variant	rs1578797
Chromosome Location	chr3:99390438-99390439
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1578796	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841679	0.82[YRI][hapmap]
rs1708168	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1717608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717610	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2458456	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2944620	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs486688	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594827	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs596300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs621061	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs639355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs641461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs648006	0.85[YRI][hapmap]
rs681819	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99385200-99393200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:99385400-99392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:99385400-99392600	Weak transcription	HMEC	breast
5	chr3:99385400-99393000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:99386200-99391000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:99386600-99392800	Weak transcription	HSMMtube	muscle
8	chr3:99386600-99393200	Weak transcription	Aorta	Aorta
9	chr3:99389000-99391800	Weak transcription	NHEK	skin
10	chr3:99389000-99392800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:99389000-99393400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:99389400-99391200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:99389400-99391400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:99389600-99393000	Weak transcription	NHDF-Ad	bronchial
15	chr3:99389800-99391800	Strong transcription	Osteobl	bone
16	chr3:99389800-99392800	Weak transcription	NH-A	brain
17	chr3:99389800-99393000	Strong transcription	HSMM	muscle
18	chr3:99389800-99393000	Weak transcription	HUVEC	blood vessel
19	chr3:99389800-99393000	Weak transcription	NHLF	lung
20	chr3:99390000-99393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:99390200-99391000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:99390200-99391200	Strong transcription	Muscle Satellite Cultured Cells	--

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