Variant report

Variant	rs6482266
Chromosome Location	chr10:23642415-23642416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10828429	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10828432	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828433	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013394	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013406	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036919	0.81[CEU][hapmap]
rs2036920	0.81[CEU][hapmap]
rs3952640	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4259746	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7085364	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7906070	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23635200-23643800	Weak transcription	Fetal Kidney	kidney
2	chr10:23639600-23644000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:23641400-23643200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:23641600-23643600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:23641800-23643200	Weak transcription	NHEK	skin
6	chr10:23641800-23653600	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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