Variant report

Variant	rs2036919
Chromosome Location	chr10:23636106-23636107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:23636102-23636848	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
C10orf67	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10159586	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159622	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159725	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1039966	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10734044	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10734045	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10741025	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10764400	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828434	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11013381	0.80[GIH][hapmap]
rs11013395	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11013408	0.86[EUR][1000 genomes]
rs11013409	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036917	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036918	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036920	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2036921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137156	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2175503	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4075675	0.82[CHB][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4326695	0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4575157	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4747464	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747465	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748852	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748864	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748865	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4748867	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748868	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748869	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748870	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748872	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748873	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6482267	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6482268	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6482269	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7076538	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7085049	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7087803	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7092292	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7095180	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7100583	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7893984	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7894108	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7894725	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7898413	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7904665	0.85[YRI][hapmap]
rs7904764	0.85[YRI][hapmap]
rs7906070	0.81[CEU][hapmap]
rs7913858	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7923763	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs869158	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9299781	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9299782	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20282	chr10:23635447-23636434	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23633800-23636400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:23633800-23636400	Weak transcription	Aorta	Aorta
3	chr10:23633800-23636400	Weak transcription	Ovary	ovary
4	chr10:23633800-23636400	Weak transcription	Psoas Muscle	Psoas
5	chr10:23633800-23636600	Weak transcription	Left Ventricle	heart
6	chr10:23633800-23636600	Enhancers	Hela-S3	cervix
7	chr10:23633800-23637400	Enhancers	Fetal Heart	heart
8	chr10:23633800-23638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:23633800-23640400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:23633800-23640600	Weak transcription	Placenta	Placenta
11	chr10:23633800-23641000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:23634000-23636400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:23634000-23636400	Enhancers	Brain Hippocampus Middle	brain
14	chr10:23634000-23636600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:23634400-23641000	Weak transcription	HSMMtube	muscle
16	chr10:23634600-23636400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:23634600-23636800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:23634600-23640200	Weak transcription	NHLF	lung
19	chr10:23635200-23636200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:23635200-23636200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:23635200-23636200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:23635200-23636600	Weak transcription	HSMM	muscle
23	chr10:23635200-23637200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr10:23635200-23640600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:23635200-23643800	Weak transcription	Fetal Kidney	kidney
26	chr10:23635400-23636400	Weak transcription	Brain Angular Gyrus	brain
27	chr10:23635400-23636400	Weak transcription	NH-A	brain
28	chr10:23635400-23637000	Enhancers	HepG2	liver
29	chr10:23635400-23640000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:23635400-23640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:23635600-23636400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:23635600-23640200	Weak transcription	NHEK	skin
33	chr10:23635600-23640400	Weak transcription	HMEC	breast
34	chr10:23635600-23640400	Weak transcription	Osteobl	bone
35	chr10:23635800-23640000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:23636000-23636400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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