Variant report

Variant	rs4748864
Chromosome Location	chr10:23630195-23630196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:23629777-23630294	HEK293	kidney:	n/a	n/a
2	YY1	chr10:23629949-23630234	SK-N-SH_RA	brain:	n/a	n/a
3	KAP1	chr10:23629946-23630431	U2OS	brain:	n/a	n/a
4	SETDB1	chr10:23629927-23630417	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000224215	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10159586	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10159622	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10159725	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1039966	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10734044	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10734045	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10741025	0.83[AMR][1000 genomes]
rs10764400	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828426	0.86[YRI][hapmap]
rs10828434	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11013395	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013408	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1408986	0.84[JPT][hapmap]
rs2036917	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2036918	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2036919	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2036920	0.94[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2036921	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2137156	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175503	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4075675	1.00[CHB][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4326695	0.82[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4575157	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4747464	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4747465	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748848	0.90[YRI][hapmap]
rs4748851	0.90[YRI][hapmap]
rs4748852	0.82[AMR][1000 genomes]
rs4748865	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4748867	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748868	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748869	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748870	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748872	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748873	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6482267	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6482268	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6482269	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7075197	0.81[LWK][hapmap]
rs7076538	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7085049	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7087803	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7095180	0.83[AMR][1000 genomes]
rs7100583	0.81[AMR][1000 genomes]
rs7893984	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7894108	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7894725	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7898413	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7904665	0.84[JPT][hapmap];0.90[YRI][hapmap]
rs7904764	0.84[JPT][hapmap];0.90[YRI][hapmap]
rs7913858	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7923763	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs869158	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9299781	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9299782	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs986151	0.84[JPT][hapmap]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23619600-23631600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23627000-23630200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:23627400-23632600	Weak transcription	Left Ventricle	heart
5	chr10:23627600-23630600	Enhancers	Hela-S3	cervix
6	chr10:23627800-23630200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:23628000-23632400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:23628400-23632400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr10:23628600-23632200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:23628600-23632400	Weak transcription	HMEC	breast
11	chr10:23628600-23632400	Weak transcription	NHEK	skin
12	chr10:23628600-23632600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:23628600-23632600	Weak transcription	Right Atrium	heart
14	chr10:23628600-23632800	Weak transcription	Liver	Liver
15	chr10:23628800-23630600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:23628800-23632400	Weak transcription	Osteobl	bone
17	chr10:23628800-23632600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:23629000-23631600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr10:23629400-23630400	Enhancers	Fetal Heart	heart
20	chr10:23629400-23632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:23629400-23632200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr10:23629400-23632400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:23629600-23630400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:23629600-23630400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr10:23629600-23630600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:23629600-23630600	Enhancers	Dnd41	blood
27	chr10:23629600-23631800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:23629800-23630200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:23630000-23630200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:23630000-23630200	Enhancers	Fetal Kidney	kidney
31	chr10:23630000-23630200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:23630000-23630400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:23630000-23630400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:23630000-23630400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:23630000-23630400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:23630000-23630400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links