Variant report

Variant	rs7898413
Chromosome Location	chr10:23627829-23627830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23626915..23628880-chr10:23630424..23633314,2	MCF-7	breast:
2	chr10:23627063..23628763-chr10:23630425..23632058,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179133	Chromatin interaction
ENSG00000224215	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10159586	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10159622	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10159725	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1039966	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10734044	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10734045	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10741025	0.85[AMR][1000 genomes]
rs10764400	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10828434	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11013395	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013408	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013409	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036917	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036918	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2036919	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2036920	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2036921	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2137156	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175503	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4075675	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4326695	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4575157	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4747464	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4747465	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4748852	0.83[AMR][1000 genomes]
rs4748864	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4748865	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748867	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748868	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748869	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748870	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748872	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748873	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6482267	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482268	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6482269	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7076538	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7085049	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7087803	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7092292	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7095180	0.85[AMR][1000 genomes]
rs7100583	0.82[AMR][1000 genomes]
rs7893984	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894108	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7894725	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7913858	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7923763	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs869158	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9299781	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9299782	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23619600-23631600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23620800-23629400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:23624000-23628600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:23626200-23629000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:23626600-23628600	Enhancers	HMEC	breast
7	chr10:23626600-23628800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:23626800-23628600	Enhancers	NHEK	skin
9	chr10:23627000-23628600	Enhancers	Liver	Liver
10	chr10:23627000-23630200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:23627200-23628000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:23627200-23628600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:23627200-23628800	Enhancers	Osteobl	bone
14	chr10:23627400-23628400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:23627400-23632600	Weak transcription	Left Ventricle	heart
16	chr10:23627600-23628000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:23627600-23630600	Enhancers	Hela-S3	cervix
18	chr10:23627800-23628200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:23627800-23630200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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