Variant report

Variant	rs9299782
Chromosome Location	chr10:23634334-23634335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10159586	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10159622	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10159725	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1039966	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10734044	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10734045	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10741025	0.85[AMR][1000 genomes]
rs10764400	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828434	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013395	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013408	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013409	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036917	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036918	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2036919	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2036920	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2036921	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2137156	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175503	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4075675	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4326695	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4575157	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4747464	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747465	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4748852	0.83[AMR][1000 genomes]
rs4748864	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4748865	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748867	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748868	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748869	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748870	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748872	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748873	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6482267	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6482268	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6482269	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7076538	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7085049	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7087803	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7092292	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7095180	0.85[AMR][1000 genomes]
rs7100583	0.82[AMR][1000 genomes]
rs7893984	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7894108	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7894725	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7898413	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7913858	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7923763	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs869158	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9299781	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357321	chr10:23631971-23634519	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23632600-23634600	Active TSS	Brain Substantia Nigra	brain
2	chr10:23633400-23634400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr10:23633600-23634600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:23633600-23635200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr10:23633800-23634400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:23633800-23634400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr10:23633800-23634400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr10:23633800-23634400	Enhancers	Right Atrium	heart
9	chr10:23633800-23634600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:23633800-23634600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:23633800-23634600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:23633800-23635000	Enhancers	HepG2	liver
13	chr10:23633800-23635200	Enhancers	HSMM	muscle
14	chr10:23633800-23635400	Enhancers	NH-A	brain
15	chr10:23633800-23635800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:23633800-23636400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:23633800-23636400	Weak transcription	Aorta	Aorta
18	chr10:23633800-23636400	Weak transcription	Ovary	ovary
19	chr10:23633800-23636400	Weak transcription	Psoas Muscle	Psoas
20	chr10:23633800-23636600	Weak transcription	Left Ventricle	heart
21	chr10:23633800-23636600	Enhancers	Hela-S3	cervix
22	chr10:23633800-23637400	Enhancers	Fetal Heart	heart
23	chr10:23633800-23638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:23633800-23640400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:23633800-23640600	Weak transcription	Placenta	Placenta
26	chr10:23633800-23641000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:23634000-23634400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:23634000-23634400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr10:23634000-23634400	Enhancers	Fetal Brain Male	brain
30	chr10:23634000-23634400	Weak transcription	NHLF	lung
31	chr10:23634000-23634800	Weak transcription	Brain Angular Gyrus	brain
32	chr10:23634000-23634800	Weak transcription	Fetal Kidney	kidney
33	chr10:23634000-23634800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:23634000-23635000	Weak transcription	Brain Anterior Caudate	brain
35	chr10:23634000-23635000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:23634000-23635000	Bivalent Enhancer	Fetal Lung	lung
37	chr10:23634000-23635200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:23634000-23635200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:23634000-23635400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:23634000-23635600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:23634000-23635600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:23634000-23635600	Enhancers	HMEC	breast
43	chr10:23634000-23635600	Enhancers	NHEK	skin
44	chr10:23634000-23635600	Enhancers	Osteobl	bone
45	chr10:23634000-23636400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:23634000-23636400	Enhancers	Brain Hippocampus Middle	brain
47	chr10:23634000-23636600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:23634200-23634400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr10:23634200-23634400	Enhancers	HSMMtube	muscle
50	chr10:23634200-23634600	Weak transcription	Fetal Brain Female	brain

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