Variant report

Variant	rs6482269
Chromosome Location	chr10:23647135-23647136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23646010..23648566-chr10:23651251..23652960,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10159586	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10159622	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10159725	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1039966	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10734044	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10734045	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10741025	0.82[AMR][1000 genomes]
rs10764400	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10828434	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013395	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11013408	0.82[EUR][1000 genomes]
rs11013409	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2036917	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2036918	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2036919	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2036920	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2036921	0.93[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2137156	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2175503	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4075675	0.84[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4326695	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4575157	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4747464	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4747465	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4748852	0.81[AMR][1000 genomes]
rs4748864	0.96[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4748865	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4748867	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4748868	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748869	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4748870	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4748872	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748873	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6482267	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482268	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7076538	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7085049	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7087803	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7092292	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7095180	0.82[AMR][1000 genomes]
rs7100583	0.80[AMR][1000 genomes]
rs7893984	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7894108	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7894725	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7898413	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7906070	0.81[CEU][hapmap]
rs7913858	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7923763	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs869158	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9299781	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9299782	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23641800-23653600	Weak transcription	HMEC	breast
2	chr10:23644000-23648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:23644400-23647600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:23644400-23647600	Weak transcription	NHEK	skin
5	chr10:23644400-23649000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links